This is a fairly niche modification.
EU2 and EU3 engines are fitted with significantly different airbox sensors.
The EU2 uses a three wire Ambient Air Pressure sensor, while the EU3 uses a four wire Ambient Air Pressure/Ambient Air Temp sensor.
The curve of the AAP portions of the two sensors are different and require different parameters to give the correct reading.
Without adjusting the parameters there is a misread of around 10kPa. You'll get an over-read ( -700 m altitude) with EU2 AAP + EU3 tune, and under read (+700m altitude) with EU3 AAP + EU2 tune.
The problem is not so bad with EU2 AAP + EU3 tune as the engine assumes higher air density in some correction maps and will INCREASE injected fuel and give a 0.1 bar increase in the boost limit. The boost level is MAP - AAP so reducing AAP by 0.1 results in boost levels 0.1 higher than the would be with correct setup. I suspect this is why you often hear the comment that an EU3 tune drives better that the correct EU2 tune.
If you've addressed the issue by installing a 4-wire sensor - replace airbox lid, sensor and run an extra wire back to the ECU - the problem occurs when you want to run an EU2 map on the motor. The under-read means the ECU uses corrections which reduce the fuelling plus the boost limit is reduced by 0.1 bar. It guarantees bad performance.
The fix is in
The way to fix this problem is to use the correct parameters for the AAP you have installed. Search for the values for the base map and replace with values for the sensor you are using.
EU3 - 4 wire sensor
multiplier: 13171 ( 0x3373 )
offset: 267 ( 0x010B )
EU2 - 3 wire sensor
multiplier: 10410 ( 0x28AA )
offset: 1227 ( 0x04CB )
It's not too hard to find these values with a hex editor as I think they are fairly unique. As a rough guide they are somewhere around an offset of 0x6A0 from the start of the fuel map. In a Nanocom .map the fuel map always begins at 0x19010.
The donor-ware XDF's now have a patch that swaps the values. It's a bit rough as it shows a stock EU3 tune as being patched, so installing the EU2 parameters requires "reversing" the patch.